PSCRIdb, a manually curated database composed of protein-protein, protein-DNA, gene-gene and miRNA-mRNA interaction datasets in human and mouse pluripotent stem cells (PSCs). The database integrates high throughput followed by low throughput data such as affinity purification-mass spectrometry (AP-MS), co-immunoprecipitation (Co-IP), ChIP-on-chip followed by qRT-PCR, ChIP-Seq followed by qRT-PCR, knockdown and over expression followed by qRt-PCR. A total 3037 entries from published literatures are compiled in the database. It integrates 1672 protein-protein, 572 protein-DNA, 443 gene-gene and 353 miRNA-mRNA interaction data.


User Search
Keyword

Protein-Protein Interaction Protein-DNA Interaction Gene-Gene Interaction miRNA-mRNA Interaction

 

Examples

Gene Name/ Protein Name/ miRNA Name Organism Cell line
Pou5f1, Oct-4, hsa-miR-145 Mus musculus, Homo sapiens E14, D3, H9








© 2019 Saha Lab @ Bose Institute, Kolkata. All rights reserved

For queries, suggestions and submission of interactions please contact Dr. Sudipto Saha (ssaha4@jcbose.ac.in)

Last updated on 22nd November, 2019

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