PSCRIdb, a manually curated database composed of protein-protein, protein-DNA, gene-gene and miRNA-mRNA interaction datasets in human and mouse pluripotent stem cells (PSCs). The database integrates high throughput followed by low throughput data such as affinity purification-mass spectrometry (AP-MS), co-immunoprecipitation (Co-IP), ChIP-on-chip followed by qRT-PCR, ChIP-Seq followed by qRT-PCR, knockdown and over expression followed by qRt-PCR. A total 3037 entries from published literatures are compiled in the database. It integrates 1672 protein-protein, 572 protein-DNA, 443 gene-gene and 353 miRNA-mRNA interaction data.
|
User Search |
|
Examples |
Gene Name/ Protein Name/ miRNA Name |
Organism |
Cell line |
Pou5f1, Oct-4, hsa-miR-145 |
Mus musculus, Homo sapiens |
E14, D3, H9 |
|
|
© 2019 Saha Lab @ Bose Institute, Kolkata. All rights reserved
For queries, suggestions and submission of interactions please contact Dr. Sudipto Saha (ssaha4@jcbose.ac.in)
Last updated on 22nd November, 2019
Best viewed in
Min. Screen resolution: 1024 x 768
|
|