BLAST: Homology Search within piRNAs

Enter sequence below in FASTA format
Or load it from disk

Set subsequence: From        To

The query sequence is filtered for low complexity regions by default.

Choose program to use and database to search:

                          Program     Database
 
Filter Low complexity Mask for lookup table only
Expect    Matrix Perform ungapped alignment  
Query Genetic Codes (blastx only) Database Genetic Codes (tblast[nx] only)
Frame shift penalty for blastx Other advanced options:     
Graphical Overview    Alignment view  
Descriptions    Alignments Color schema