BCSCDB: Biomarkers of Cancer Stem Cells Database
Number of marker genes starting with is 107
| GENE | HGNC_ID | CANCER_TYPE | HISTOLOGICAL_TYPE | CSC_ENRICHMENT | METHOD | CONFIDENCE_SCORING | GLOBAL_SCORING | PUBMED_ID |
|---|---|---|---|---|---|---|---|---|
| POU5F1 | 9221 | Gastric Cancer | NA | NA | SFA and RT-PCR followed by Western Blotting and IHC ataining | 0.96 | 0.6448 | 32788883 |
| POU5F1 | 9221 | Gastric Cancer | NA | NA | IHC staining | 0.96 | 0.6448 | 29422082 |
| POU5F1 | 9221 | Gastric Cancer | NA | NA | IHC staining | 0.96 | 0.6448 | 28356964 |
| POU5F1 | 9221 | Gastric Cancer | NA | NA | qRT-PCR | 0.96 | 0.6448 | 30628031 |
| POU5F1 | 9221 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.96 | 0.6448 | 33986804 |
| POU5F1 | 9221 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.96 | 0.6448 | 32350414 |
| SOX2 | 11195 | Gastric Cancer | NA | NA | SFA and RT-PCR followed by Western Blotting and IHC ataining | 0.96 | 0.5695 | 32788883 |
| SOX2 | 11195 | Gastric Cancer | NA | NA | SFA followed by Western Blotting and IHC staining | 0.96 | 0.5695 | 30745823 |
| SOX2 | 11195 | Gastric Cancer | NA | NA | IHC staining | 0.96 | 0.5695 | 28356964 |
| SOX2 | 11195 | Gastric Cancer | NA | NA | IHC staining | 0.96 | 0.5695 | 28046028 |
| SOX2 | 11195 | Gastric Cancer | NA | NA | qRT-PCR | 0.96 | 0.5695 | 30628031 |
| SOX2 | 11195 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.96 | 0.5695 | 32350414 |
| SOX2 | 11195 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.96 | 0.5695 | 26862521 |
| CLU | 2095 | Gastric Cancer | NA | NA | SFA followed by Western Blotting and IHC staining | 0.68 | 0.0064 | 30745823 |
| HMGA2 | 5009 | Gastric Cancer | NA | NA | IHC staining followed by Western Blotting | 0.68 | 0.0042 | 27878307 |
| HMGA2 | 5009 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.0042 | 28337375 |
| MSI1 | 7330 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.0201 | 24151393 |
| MSI1 | 7330 | Gastric Cancer | NA | NA | Western Blotting followed by IHC staining | 0.68 | 0.0201 | 28521458 |
| PROM1 | 9454 | Gastric Cancer | Carcinoma | NA | IHC staining | 0.68 | 0.7582 | 31217618 |
| PROM1 | 9454 | Gastric Cancer | NA | Cisplatin | IHC staining followed by Western Blotting | 0.68 | 0.7582 | 33635343 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | Western Blotting followed by SFA | 0.68 | 0.7582 | 31309567 |
| PROM1 | 9454 | Gastric Cancer | Submucosal | NA | IHC staining | 0.68 | 0.7582 | 33450435 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.7582 | 34160355 |
| PROM1 | 9454 | Gastric Cancer | Adenocarcinoma | NA | IHC staining | 0.68 | 0.7582 | 34027868 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.7582 | 34532091 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.7582 | 33118117 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.7582 | 29422082 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.7582 | 30240769 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.7582 | 31611965 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | IHC staining | 0.68 | 0.7582 | 28261336 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | FACs followed by SFA | 0.68 | 0.7582 | 27620279 |
| PROM1 | 9454 | Gastric Cancer | NA | NA | SFA followed by FACs | 0.68 | 0.7582 | 32350414 |
| TWIST1 | 12428 | Gastric Cancer | NA | NA | IHC staining followed by Western Blotting | 0.68 | 0.0191 | 27878307 |
| ALDH1A1 | 402 | Gastric Cancer | NA | 5-Fluorouracil | RT-PCR and IF staining | 0.6 | 0.684 | 31960523 |
| ALDH1A1 | 402 | Gastric Cancer | NA | NA | Western Blotting followed by SFA | 0.6 | 0.684 | 31309567 |
| ALDH1A1 | 402 | Gastric Cancer | Submucosal | NA | IHC staining | 0.6 | 0.684 | 33450435 |
| ALDH1A1 | 402 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 0.684 | 33118117 |
| ALDH1A1 | 402 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 0.684 | 30240769 |
| ALDH1A1 | 402 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 0.684 | 31611965 |
| ALDH1A1 | 402 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 0.684 | 28046028 |
| ALDH1A1 | 402 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 0.684 | 28952294 |
| ALDH1A1 | 402 | Gastric Cancer | NA | NA | FACs followed by SFA | 0.6 | 0.684 | 27620279 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining and RT-PCR | 0.6 | 1 | 28053963 |
| CD44 | 1681 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR and IF staining | 0.6 | 1 | 33986804 |
| CD44 | 1681 | Gastric Cancer | NA | NA | Western Blotting followed by SFA | 0.6 | 1 | 31309567 |
| CD44 | 1681 | Gastric Cancer | Submucosal | NA | IHC staining | 0.6 | 1 | 33450435 |
| CD44 | 1681 | Gastric Cancer | Adenocarcinoma | NA | IHC staining | 0.6 | 1 | 34027868 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 33288885 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 33118117 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 31489619 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 30240769 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 31632151 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 28261336 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 28337375 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 28828692 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 29445738 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 27931044 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 27055559 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 24910454 |
| CD44 | 1681 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 1 | 28952294 |
| CD44 | 1681 | Gastric Cancer | NA | NA | SFA followed by IHC staining | 0.6 | 1 | 21727908 |
| CD44 | 1681 | Gastric Cancer | NA | NA | FACs followed by SFA | 0.6 | 1 | 27620279 |
| CD44 | 1681 | Gastric Cancer | NA | NA | SFA followed by FACs | 0.6 | 1 | 32350414 |
| CD44 | 1681 | Gastric Cancer | NA | NA | SFA followed by FACs | 0.6 | 1 | 29178392 |
| CD44 | 1681 | Gastric Cancer | NA | NA | SFA followed by FACs | 0.6 | 1 | 30641083 |
| LGR5 | 4504 | Gastric Cancer | NA | NA | IHC staining and RT-PCR | 0.6 | 0.0753 | 28053963 |
| LGR5 | 4504 | Gastric Cancer | NA | NA | IF staining | 0.6 | 0.0753 | 29604141 |
| LGR5 | 4504 | Gastric Cancer | NA | NA | Western Blotting followed by SFA | 0.6 | 0.0753 | 31309567 |
| LGR5 | 4504 | Gastric Cancer | NA | NA | IHC staining | 0.6 | 0.0753 | 34160355 |
| LGR5 | 4504 | Gastric Cancer | NA | NA | SFA followed by FACs | 0.6 | 0.0753 | 32350414 |
| SCD | 10571 | Gastric Cancer | NA | NA | SFA followed by Proteomics and Western Blotting | 0.52 | 0.0127 | 32350414 |
| SLC34A2 | 11020 | Gastric Cancer | NA | NA | SFA followed by Western Blotting | 0.36 | 0.0011 | 29178392 |
| ABCG2 | 74 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.1739 | 28404967 |
| CBX7 | 1557 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0011 | 29422082 |
| CLSPN | 19715 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0032 | 30240769 |
| DLL4 | 2910 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0042 | 27891816 |
| DLL4 | 2910 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0042 | 34410967 |
| DLL4 | 2910 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0042 | 27891816 |
| ICAM1 | 5344 | Gastric Cancer | NA | NA | SFA followed by IHC staining | 0.32 | 0.0064 | 21727908 |
| ICAM1 | 5344 | Gastric Cancer | NA | NA | SFA followed by FACs | 0.32 | 0.0064 | 30641083 |
| KLF4 | 6348 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0891 | 28356964 |
| MTDH | 29608 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0011 | 31632151 |
| MYC | 7553 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.32 | 0.1304 | 26862521 |
| MYC | 7553 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.1304 | 28356964 |
| NANOG | 20857 | Gastric Cancer | NA | NA | qPCR | 0.32 | 0.5461 | 26870231 |
| NANOG | 20857 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.32 | 0.5461 | 26862521 |
| NANOG | 20857 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.5461 | 28356964 |
| NANOG | 20857 | Gastric Cancer | NA | NA | qRT-PCR | 0.32 | 0.5461 | 30628031 |
| NANOG | 20857 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.32 | 0.5461 | 33986804 |
| NANOG | 20857 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.32 | 0.5461 | 32350414 |
| NES | 7756 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0573 | 27891816 |
| NES | 7756 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0573 | 27891816 |
| PCNA | 8729 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0032 | 24151393 |
| SNAI2 | 11094 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0159 | 34532091 |
| TAP1 | 43 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0021 | 34410967 |
| YAP1 | 16262 | Gastric Cancer | NA | NA | IHC staining | 0.32 | 0.0117 | 31489619 |
| BMI1 | 1066 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.28 | 0.1135 | 33986804 |
| E2F1 | 3113 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.28 | 0.0021 | 33986804 |
| ERBB2 | 3430 | Gastric Cancer | NA | NA | SFA followed by qRT-PCR | 0.28 | 0.0074 | 32974199 |
| MIR25 | 31609 | Gastric Cancer | NA | NA | FACs for CSC marker followed by qRT-PCR | 0.28 | 0.0032 | 29178392 |
| PSCA | 9500 | Gastric Cancer | NA | NA | qPCR | 0.28 | 0.0032 | 26870231 |
| ALCAM | 400 | Gastric Cancer | NA | NA | FACs followed by SFA | 0.2 | 0.0583 | 27620279 |
| CACNA2D1 | 1399 | Gastric Cancer | NA | NA | FACs | 0.2 | 0.0064 | 31213895 |
| CD24 | 1645 | Gastric Cancer | NA | NA | FACs followed by SFA | 0.2 | 0.456 | 27620279 |
| EPCAM | 11529 | Gastric Cancer | NA | NA | FACs | 0.2 | 0.211 | 31213895 |
| EPCAM | 11529 | Gastric Cancer | NA | NA | SFA followed by FACs | 0.2 | 0.211 | 30641083 |
| STAT3 | 11364 | Gastric Cancer | NA | NA | SFA followed by FACs | 0.2 | 0.0223 | 26862521 |