Query   'WD40 repeat domain'  matched   43 Records

Record No : 1

Instance ID10159
Regular ExpressionxRxxLxx[LIVM]x
Motif InstanceHRKHLQEIP
Bait Uniprot AccessionQ13309
Bait Uniprot IdentifierSKP2_HUMAN
Bait Gene NameSKP2
Bait OrganismHomo sapiens (Human)
Sequence Position2-10
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Co-IP; Pull down; Radiolabel; Mutation analysis
Interaction ID20159
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)15014503
CommentsThe APCC-binding Destruction motif (DBox) due to which the human F-box protein Skp2 is polyubiquitinated, and hence earmarked for destruction, by APC(CDH1)

Record No : 2

Instance ID10172
Regular ExpressionxKENx
Motif InstanceVKENL
Bait Uniprot AccessionQ08981
Bait Uniprot IdentifierACM1_YEAST
Bait Gene NameACM1
Bait OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Sequence Position97-101
Critical ResiduesP2; P3; P4
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Co-IP; Mutation analysis
Interaction ID20172
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)18596038
CommentsKEN box motif in budding yeast Acm1 protein that is required for high affinity interaction with the substrate receptor site on the WD40 domain of Cdh1 that may serve both to promote APC inhibition and protect Acm1 from destruction

Record No : 3

Instance ID10173
Regular ExpressionxKENx
Motif InstanceAKENE
Bait Uniprot AccessionO60566
Bait Uniprot IdentifierBUB1B_HUMAN
Bait Gene NameBUB1B
Bait OrganismHomo sapiens (Human)
Sequence Position303-307
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Mutation analysis
Interaction ID20173
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)22193957
CommentsSecond KEN-box motif (303-307) of human Mitotic checkpoint kinase BUB1 beta, a subunit of the Spindle Assembly Checkpoint (SAC),that binds to the substrate recruitment site of human CDC20, the substrate recognition subunit of the Anaphase Promoting Complex/Cyclosome (APC/C), thereby blocking the recruitment of substrates to the APC/C

Record No : 4

Instance ID10174
Regular ExpressionxKENx
Motif InstanceSKENV
Bait Uniprot AccessionO60566
Bait Uniprot IdentifierBUB1B_HUMAN
Bait Gene NameBUB1B
Bait OrganismHomo sapiens (Human)
Sequence Position25-29
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary Structure3(10)-helix
Experimental Method(s)X-ray crystallography; Mutation analysis
Interaction ID20174
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)23091007
CommentsCheckpoint inhibition of APC/C(Cdc20) requires the binding of the first BubR1 (BUB1B) KEN box (25-29) to Cdc20

Record No : 5

Instance ID10241
Regular Expression[DE][DE]xxxVP[DE]
Motif InstanceEEPQTVPE
Bait Uniprot AccessionP05412
Bait Uniprot IdentifierJUN_HUMAN
Bait Gene NameJUN
Bait OrganismHomo sapiens (Human)
Sequence Position227-234
Critical ResiduesP6; P7
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Mutation analysis; Co-IP
Interaction ID20241
Interacting DomainWD40 repeat domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)12615916
CommentsA consensus motif in human Transcription factor AP-1 (JUN) whose integrity is essential for the interaction with human E3 ubiquitin-protein ligase RFWD2 (or human COP1) causing suppression of AP-1-dependent transcription

Record No : 6

Instance ID10242
Regular Expression[DE][DE]xxxVP[DE]
Motif InstanceEEIRRVPE
Bait Uniprot AccessionO24646
Bait Uniprot IdentifierHY5_ARATH
Bait Gene NameHY5
Bait OrganismArabidopsis thaliana (Mouse-ear cress)
Sequence Position38-45
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Pull down
Interaction ID20242
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)9659918
CommentsArabidopsis COP1 negatively regulates HY5, a bZIP protein and a positive regulator of photomorphogenic development, through a consensus COP1 binding motif

Record No : 7

Instance ID10243
Regular Expression[DE][DE]xxxVP[DE]
Motif InstanceEEHFLVPD
Bait Uniprot AccessionQ9SID1
Bait Uniprot IdentifierSTH_ARATH
Bait Gene NameSTH
Bait OrganismArabidopsis thaliana (Mouse-ear cress)
Sequence Position229-236
Critical ResiduesP6; P7
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Mutation analysis; Y2H
Interaction ID20243
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)11226162
CommentsA consensus COP1 binding motif in Arabidopsis Salt tolerance-like protein (STH) that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1

Record No : 8

Instance ID10244
Regular Expression[DE][DE]xxxVP[DE]
Motif InstanceDEPQTVPD
Bait Uniprot AccessionP17535
Bait Uniprot IdentifierJUND_HUMAN
Bait Gene NameJUND
Bait OrganismHomo sapiens (Human)
Sequence Position241-248
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Co-IP
Interaction ID20244
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)12615916
CommentsA consensus motif in human Transcription factor jun-D whose integrity is essential for the interaction with human E3 ubiquitin-protein ligase RFWD2 (or human COP1)

Record No : 9

Instance ID10250
Regular Expression[NQ]{0,1}xx[ILMV][ST][DEN][FY][FY]x{2,3}[KR]{2,3}[^DE]
Motif InstanceMRVTDFFSQSKRG
Bait Uniprot AccessionQ9I9A7
Bait Uniprot IdentifierCDT1_XENLA
Bait Gene Namecdt1
Bait OrganismXenopus laevis (African clawed frog)
Sequence Position4-16
Critical ResiduesP11
Motif PTM(s)Unknown
Secondary StructureAlpha helix
Experimental Method(s)Co-IP; Ubiquitinase assay; Western blot; Alanine scanning; Mutation analysis
Interaction ID20250
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)19595719
CommentsDocking of a specialized PIP Box motif of Xenopus DNA replication factor Cdt1 onto chromatin-bound PCNA creates a degron for the ubiquitin ligase CRL4Cdt3

Record No : 10

Instance ID10253
Regular Expression[NQ]{0,1}xx[ILMV][ST][DEN][FY][FY]x{2,3}[KR]{2,3}[^DE]
Motif InstanceRRVTDFFARRRP
Bait Uniprot AccessionQ9H211
Bait Uniprot IdentifierCDT1_HUMAN
Bait Gene NameCDT1
Bait OrganismHomo sapiens (Human)
Sequence Position4-15
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureAlpha helix
Experimental Method(s)RNA interference;Western blot; Co-IP
Interaction ID20253
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)16861906
CommentsThe human homologue of Drosophila L2DTL or fission yeast CDT2 (DTL) interacts with PCNA and regulates human DNA replication factor CDT1 proteolysis in response to DNA damage, through the conserved PIP box motif

Record No : 11

Instance ID10255
Regular Expression[NQ]{0,1}xx[ILMV][ST][DEN][FY][FY]x{2,3}[KR]{2,3}[^DE]
Motif InstanceTSMTDFYHSKRRL
Bait Uniprot AccessionP38936
Bait Uniprot IdentifierCDN1A_HUMAN
Bait Gene NameCDKN1A
Bait OrganismHomo sapiens (Human)
Sequence Position145-157
Critical ResiduesP10; P11; P12
Motif PTM(s)Unknown
Secondary StructureAlpha helix
Experimental Method(s)Fluorescence technology; RNA interference; Ubiquitinase assay; Western blot; Co-IP; Alanine scanning; Co-IP
Interaction ID20255
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)18703516, 18794347
CommentsPCNA binding domain in CDK inhibitor p21 (CDKN1A) that is responsible for degradation of p21 by PCNA-coupled Cul4-DDB1(Cdt2)-dependent proteolysis

Record No : 12

Instance ID10257
Regular Expression[NQ]{0,1}xx[ILMV][ST][DEN][FY][FY]x{2,3}[KR]{2,3}[^DE]
Motif InstanceRKLTDFYPVRRS
Bait Uniprot AccessionQ9NQR1
Bait Uniprot IdentifierSETD8_HUMAN
Bait Gene NameSETD8
Bait OrganismHomo sapiens (Human)
Sequence Position220-231
Critical ResiduesP6; P7
Motif PTM(s)Unknown
Secondary StructureAlpha helix
Experimental Method(s)RNA interference;Western blot; Co-IP; Alanine scanning; Fluorescence technology; Mutation disrupting interaction; Ubiquitinase assay
Interaction ID20257
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)20932472, 21220508
CommentsCDT2-mediated destruction of the histone methyltransferase SETD8 prevents premature chromatin compaction in S phase

Record No : 13

Instance ID10774
Regular ExpressionF[EDQS][MILV][ED][MILV]((x{0,1}[ED])|($))
Motif InstanceFEMDI
Bait Uniprot AccessionQ13541
Bait Uniprot Identifier4EBP1_HUMAN
Bait Gene NameEIF4EBP1
Bait OrganismHomo sapiens (Human)
Sequence Position114-118
Critical ResiduesP1; P2; P4
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Co-IP; Western blot; Pull down; Mutation analysis
Interaction ID20774
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)12912989
CommentsThe TOS motif in human translational repressor protein EIF4EBP1 (4E-BP1, also termed PHAS-I) acts as a docking site for the human TOR pathway adaptor protein RAPTOR

Record No : 14

Instance ID10775
Regular ExpressionF[EDQS][MILV][ED][MILV]((x{0,1}[ED])|($))
Motif InstanceFDIDLD
Bait Uniprot AccessionP23443
Bait Uniprot IdentifierKS6B1_HUMAN
Bait Gene NameRPS6KB1
Bait OrganismHomo sapiens (Human)
Sequence Position28-33
Critical ResiduesP1; P2; P4
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Pull down; Mutation analysis
Interaction ID20775
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)11967149, 12912989
CommentsThe TOS motif in human Ribosomal protein S6 kinase beta-1 (RPS6KB1) acts as a docking site for the human TOR pathway adaptor protein RAPTOR

Record No : 15

Instance ID10820
Regular Expression[LIVMP]x{0,2}(T)Pxx([ST])
Motif InstancePGTPPSS
Bait Uniprot AccessionP13051
Bait Uniprot IdentifierUNG_HUMAN
Bait Gene NameUNG
Bait OrganismHomo sapiens (Human)
Sequence Position58-64
Critical ResiduesP3
Motif PTM(s)Phosphorylation at Thr-P3
Secondary StructureDisordered
Experimental Method(s)Mass spectrometry; Mutation analysis
Interaction ID20820
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)18079698
CommentsThe TPxxS phospho-dependent degron in Human Uracil-DNA glycosylase (UNG) that binds the F box protein FBW7 (also called FBXW7, hCdc4 or hSel10) of the SCF complex via WD40 beta propeller for subsequent ubiquitin-mediated degradation

Record No : 16

Instance ID10821
Regular Expression[LIVMP]x{0,2}(T)Pxx([ST])
Motif InstanceLTPPPS
Bait Uniprot AccessionP36956
Bait Uniprot IdentifierSRBP1_HUMAN
Bait Gene NameSREBF1
Bait OrganismHomo sapiens (Human)
Sequence Position425-430
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Thr-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Protein kinase assay; ChIP; Mutation analysis; Co-IP
Interaction ID20821
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)16825193, 16054087
CommentsThe TPxxS phospho-dependent degron in Human Sterol regulatory element-binding protein 1 (SREBF1) that serves as a recognition motif for the SCF(FBW7) ubiquitin ligase and enhances its ubiquitination and degradation in a manner dependent on the phosphorylation of T426 and S430

Record No : 17

Instance ID10822
Regular Expression[LIVMP]x{0,2}(T)Pxx([ST])
Motif InstanceLLTPPQS
Bait Uniprot AccessionP24864
Bait Uniprot IdentifierCCNE1_HUMAN
Bait Gene NameCCNE1
Bait OrganismHomo sapiens (Human)
Sequence Position393-399
Critical ResiduesP3; P7
Motif PTM(s)Phosphorylation at Thr-P3 & Ser-P7
Secondary StructureUnknown
Experimental Method(s)X-ray crystallography; ITC; Mutation analysis
Interaction ID20822
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)17434132, 14536078
CommentsThe TPxxS phospho-dependent degron in Human G1/S-specific cyclin-E1 (CCNE1) that serves as a recognition motif for the SCF(FBW7) ubiquitin ligase, which mediates the degradation of cyclin E within catalytically active cyclin E-Cdk2 complexes and is not involved in the turnover of unbound or unphosphorylated cyclin E

Record No : 18

Instance ID10823
Regular Expression[LIVMP]x{0,2}(T)Pxx([ST])
Motif InstanceLLPTPPLS
Bait Uniprot AccessionP01106
Bait Uniprot IdentifierMYC_HUMAN
Bait Gene NameMYC
Bait OrganismHomo sapiens (Human)
Sequence Position55-62
Critical ResiduesP4; P8
Motif PTM(s)Phosphorylation at Thr-P4 & Ser-P8
Secondary StructureUnknown
Experimental Method(s)NMR; Competition binding; Co-IP; Ubiquitinase assay
Interaction ID20823
Interacting DomainWD40 repeat domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)15992821, 15103331
CommentsPhosphorylation-dependent degradation of Human c-Myc is mediated by the F-box protein F box protein FBXW7 of the SCF complex in a manner dependent on the phosphorylation of threonine-58 and serine-62

Record No : 19

Instance ID10824
Regular Expression[LIVMP]x{0,2}(T)Pxx([ST])
Motif InstancePGETPPLS
Bait Uniprot AccessionP05412
Bait Uniprot IdentifierJUN_HUMAN
Bait Gene NameJUN
Bait OrganismHomo sapiens (Human)
Sequence Position236-243
Critical ResiduesP8
Motif PTM(s)Phosphorylation at Ser-P8
Secondary StructureUnknown
Experimental Method(s)Peptide binding to perpetrator; Mutation disrupting interaction; Competition binding
Interaction ID20824
Interacting DomainWD40 repeat domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)16023596
CommentsPhosphorylation of Human c-Jun by GSK3 at Ser-243 creates a high-affinity binding site for the E3 ligase FBW7, which targets c-Jun for polyubiquitination and proteasomal degradation

Record No : 20

Instance ID10825
Regular Expression[LIVMP]x{0,2}(T)PxxE
Motif InstancePFLTPSPE
Bait Uniprot AccessionP46531
Bait Uniprot IdentifierNOTC1_HUMAN
Bait Gene NameNOTCH1
Bait OrganismHomo sapiens (Human)
Sequence Position2508-2515
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Sequence based prediction
Interaction ID20825
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)11585921, 11461910
CommentsThe phospho-dependent degron in Human Neurogenic locus notch homolog protein 1 (NOTCH1) that binds the F-box/WD40 repeat protein FBW7 (also called FBXW7, hCdc4 or SEL-10), which leads to an increase in Notch signaling

Record No : 21

Instance ID10826
Regular Expression[LIVMP]x{0,2}(T)PxxE
Motif InstancePPTPPPE
Bait Uniprot AccessionP03070
Bait Uniprot IdentifierLT_SV40
Bait Gene NameNot Available
Bait OrganismSimian virus 40 (SV40)
Sequence Position699-705
Critical ResiduesP3
Motif PTM(s)Phosphorylation at Thr-P3
Secondary StructureUnknown
Experimental Method(s)Co-IP; Classical fluorescence spectroscopy; Mutation analysis
Interaction ID20826
Interacting DomainWD40 repeat domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)15611062
CommentsThe SV40 large T antigen contains a decoy phosphodegron that mediates its interactions with the F box protein FBW7/FBXW7/hCdc4

Record No : 22

Instance ID10830
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGLGS
Bait Uniprot AccessionQ15653
Bait Uniprot IdentifierIKBB_HUMAN
Bait Gene NameNFKBIB
Bait OrganismHomo sapiens (Human)
Sequence Position18-23
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Mutation analysis; Radiolabel; Co-IP
Interaction ID20830
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)10497169
CommentsThe DSGxxS phospho-dependent degron in human NF-kappa-B inhibitor beta (NFKBIB/IKBB) that binds the F-box/WD repeat-containing protein beta-TrCP (BTRC) of the SCF-betaTrCP1 complex leading to ubiquitination and degradation of IKBB

Record No : 23

Instance ID10831
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGIES
Bait Uniprot AccessionO00221
Bait Uniprot IdentifierIKBE_HUMAN
Bait Gene NameNFKBIE
Bait OrganismHomo sapiens (Human)
Sequence Position156-161
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Mutation analysis; Radiolabel; Co-IP
Interaction ID20831
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)10497169
CommentsThe DSGxxS phospho-dependent degron in human NF-kappa-B inhibitor epsilon (NFKBIE/IKBE) that binds the F-box/WD repeat-containing protein beta-TrCP (BTRC) of the SCF-betaTrCP1 complex leading to ubiquitination and degradation of IKBE

Record No : 24

Instance ID10832
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGIHS
Bait Uniprot AccessionP35222
Bait Uniprot IdentifierCTNB1_HUMAN
Bait Gene NameCTNNB1
Bait OrganismHomo sapiens (Human)
Sequence Position32-37
Critical ResiduesP1; P2; P3; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)X-ray crystallography; Protein kinase assay
Interaction ID20832
Interacting DomainWD40 repeat domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)12820959
CommentsThe DSGxxS phospho-dependent degron present in human Beta-catenin (CTNNB1) that binds the F-box/WD repeat-containing protein beta-TrCP (BTRC), which recruits CTNNB1 to the SCF ubiquitin ligase complex

Record No : 25

Instance ID10833
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGVETS
Bait Uniprot AccessionP19838
Bait Uniprot IdentifierNFKB1_HUMAN
Bait Gene NameNFKB1
Bait OrganismHomo sapiens (Human)
Sequence Position926-932
Critical ResiduesP2; P7
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P7
Secondary StructureUnknown
Experimental Method(s)Competition binding; Peptide binding to perpetrator; Protein kinase assay
Interaction ID20833
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)12482991
CommentsThe DSGxxS phospho-dependent degron present in human Nuclear factor NF-kappa-B p105 subunit (NFKB1) that binds to the F-box/WD repeat-containing protein beta-TrCP (BTRC) for beta-TrCP-mediated proteolysis of NF-kappaB1 p105

Record No : 26

Instance ID10834
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGLDS
Bait Uniprot AccessionP25963
Bait Uniprot IdentifierIKBA_HUMAN
Bait Gene NameNFKBIA
Bait OrganismHomo sapiens (Human)
Sequence Position31-36
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Mutation analysis; Radiolabel; Mass spectrometry; Protein kinase assay; Peptide binding to perpetrator; Co-IP
Interaction ID20834
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)10497169, 10230406, 9990852
CommentsThe DSGxxS phospho-dependent degron in human NF-kappa-B inhibitor alpha (NFKBIA/IKBA) that binds to the F-box/WD repeat-containing protein beta-TrCP (BTRC), which recruits IKBA to the SCF ubiquitin ligase complex leading to its ubiquitination and degradation

Record No : 27

Instance ID10835
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGQGS
Bait Uniprot AccessionQ9HAW4
Bait Uniprot IdentifierCLSPN_HUMAN
Bait Gene NameCLSPN
Bait OrganismHomo sapiens (Human)
Sequence Position29-34
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Mutation analysis; Co-IP; Fluorescence-activated cell sorting
Interaction ID20835
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)16885022
CommentsThe DSGxxS phospho-dependent degron in Human Claspin (CLSPN) that binds to the F-box/WD repeat-containing protein beta-TrCP (BTRC) for SCF-betaTrCP complex-mediated degradation of Claspin, which regulates recovery from the DNA replication checkpoint response

Record No : 28

Instance ID10836
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGICMS
Bait Uniprot AccessionP18848
Bait Uniprot IdentifierATF4_HUMAN
Bait Gene NameATF4
Bait OrganismHomo sapiens (Human)
Sequence Position218-224
Critical ResiduesP1; P2
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P7
Secondary StructureUnknown
Experimental Method(s)Y2H; Mutation analysis; Radiolabel; Protein kinase assay
Interaction ID20836
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)11238952
CommentsDegradation of human cAMP-dependent transcription factor ATF4 relies on a phosphorylation-dependent interaction with the SCF(betaTrCP) ubiquitin ligase via the DSGxxS phospho-dependent degron

Record No : 29

Instance ID10837
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGLPS
Bait Uniprot AccessionQ12959
Bait Uniprot IdentifierDLG1_HUMAN
Bait Gene NameDLG1
Bait OrganismHomo sapiens (Human)
Sequence Position597-602
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Pull down; Western blot; Co-IP; RNA interference
Interaction ID20837
Interacting DomainWD40 repeat domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)12902344
CommentsThe DSGxxS phospho-dependent degron present in human Disks large homolog 1 (DLG1) that mediates phosphorylation-dependent interaction with the beta-TrCP ubiquitin ligase receptor

Record No : 30

Instance ID10838
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGYSS
Bait Uniprot AccessionQ9UKT4
Bait Uniprot IdentifierFBX5_HUMAN
Bait Gene NameFBXO5
Bait OrganismHomo sapiens (Human)
Sequence Position144-149
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Protein kinase assay; Knock out; Classical fluorescence spectroscopy
Interaction ID20838
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)12791266
CommentsThe DSGxxS phospho-dependent degron in human F-box only protein 5 (FBXO5) that binds the F-box/WD repeat-containing protein beta-TrCP (BTRC), a component of the SCF ubiquitin ligase complex

Record No : 31

Instance ID10839
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGYNT
Bait Uniprot AccessionQ6PGQ7
Bait Uniprot IdentifierBORA_HUMAN
Bait Gene NameBORA
Bait OrganismHomo sapiens (Human)
Sequence Position496-501
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Thr-P6
Secondary StructureUnknown
Experimental Method(s)Mass spectrometry; Protein kinase assay; Co-IP
Interaction ID20839
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)18378770
CommentsThe DSGxxS phospho-dependent degron in Human aurora borealis (BORA) that binds the F-box/WD repeat-containing protein beta-TrCP (BTRC), a component of the SCF ubiquitin ligase complex leading to BORA degradation, which is required for normal mitotic progression

Record No : 32

Instance ID10840
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGRGS
Bait Uniprot AccessionP16471
Bait Uniprot IdentifierPRLR_HUMAN
Bait Gene NamePRLR
Bait OrganismHomo sapiens (Human)
Sequence Position348-353
Critical ResiduesP2
Motif PTM(s)Phosphorylation at Ser-P2
Secondary StructureUnknown
Experimental Method(s)Peptide binding to perpetrator; Protein kinase assay; Co-IP
Interaction ID20840
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)15082796
CommentsThe pituitary hormone prolactin (PRL) promotes interaction between Human Prolactin receptor (PRLR) and the F-box/WD repeat-containing protein beta-TrCP (BTRC), substrate recognition subunit of the SCF ubiquitin ligase complex, depending on phosphorylation of serine 349

Record No : 33

Instance ID10841
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGNES
Bait Uniprot AccessionP05923
Bait Uniprot IdentifierVPU_HV1BR
Bait Gene Namevpu
Bait OrganismHuman immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1)
Sequence Position51-56
Critical ResiduesP2
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)NMR; Radiolabel; Confocal microscopy
Interaction ID20841
Interacting DomainWD40 repeat domain
Disease Association(s)Human immunodeficiency virus (HIV) infection
Inhibitor(s)Unknown
Reference(s)14674748, 14561767
CommentsPhosphorylation of the HIV-1 protein Vpu at Ser52 and Ser56 within the DSGXXS motif is required for its interaction with the SCF-betaTrCP ubiquitin ligase complex, which triggers HIV receptor CD4 degradation by the proteasome

Record No : 34

Instance ID10842
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGHES
Bait Uniprot AccessionP03230
Bait Uniprot IdentifierLMP1_EBVB9
Bait Gene NameLMP1
Bait OrganismEpstein-Barr virus (strain B95-8) (HHV-4) (Human herpesvirus 4)
Sequence Position210-215
Critical ResiduesP3
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Co-IP; Mutation analysis
Interaction ID20842
Interacting DomainWD40 repeat domain
Disease Association(s)Epstein-Barr Virus (EBV) infection
Inhibitor(s)Unknown
Reference(s)14523018
CommentsThe Epstein-Barr virus latent membrane protein 1 (LMP1) is a pseudo-substrate of the SCF-betaTrCP ubiquitin ligase complex and the interaction between LMP1 and the F-box protein beta-TrCP (BTRC) restricts the extent of LMP1-induced NF-kappaB signaling

Record No : 35

Instance ID10843
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGRGDS
Bait Uniprot AccessionQ53EL6
Bait Uniprot IdentifierPDCD4_HUMAN
Bait Gene NamePDCD4
Bait OrganismHomo sapiens (Human)
Sequence Position70-76
Critical ResiduesP2
Motif PTM(s)Phosphorylation at Ser-P2
Secondary StructureUnknown
Experimental Method(s)Mutation analysis; Protein kinase assay; Mass spectrometry
Interaction ID20843
Interacting DomainWD40 repeat domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)17053147
CommentsThe physical interaction between the tumor suppressor Programmed cell death protein 4 (PDCD4) and the F-box/WD repeat-containing protein beta-TrCP (BTRC) requires the DSGXX(X)S degron and is stimulated by phosphorylation on Ser67 of PDCD4

Record No : 36

Instance ID10844
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGIDS
Bait Uniprot AccessionP98174
Bait Uniprot IdentifierFGD1_HUMAN
Bait Gene NameFGD1
Bait OrganismHomo sapiens (Human)
Sequence Position282-287
Critical ResiduesP2
Motif PTM(s)Phosphorylation at Ser-P2 & Ser-P6
Secondary StructureUnknown
Experimental Method(s)Co-IP; Radiolabel; Alanine scanning
Interaction ID20844
Interacting DomainWD40 repeat domain
Disease Association(s)Faciogenital dysplasia
Inhibitor(s)Unknown
Reference(s)15743413
CommentsThe DSGxxS phospho-dependent degron in human FGD1, the Cdc42 guanine nucleotide exchange factor (GEF) responsible for faciogenital dysplasia, that binds the F-box/WD repeat-containing protein beta-TrCP (BTRC), substrate recognition subunit of the SCF ubiquitin ligase complex

Record No : 37

Instance ID10845
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGIDS
Bait Uniprot AccessionQ5JSP0
Bait Uniprot IdentifierFGD3_HUMAN
Bait Gene NameFGD3
Bait OrganismHomo sapiens (Human)
Sequence Position75-80
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Thr-P6
Secondary StructureUnknown
Experimental Method(s)Co-IP; Classical fluorescence spectroscopy; Western blot; Alanine scanning
Interaction ID20845
Interacting DomainWD40 repeat domain
Disease Association(s)Faciogenital dysplasia
Inhibitor(s)Unknown
Reference(s)18363964
CommentsThe DSGxxS phospho-dependent degron in human FGD3, a putative Cdc42 guanine nucleotide exchange factor (GEF), that binds the F-box/WD repeat-containing protein beta-TrCP (BTRC), substrate recognition subunit of the SCF ubiquitin ligase complex

Record No : 38

Instance ID10846
Regular ExpressionD(S)Gx{2,3}([ST])
Motif InstanceDSGNYS
Bait Uniprot AccessionP17181
Bait Uniprot IdentifierINAR1_HUMAN
Bait Gene NameIFNAR1
Bait OrganismHomo sapiens (Human)
Sequence Position534-539
Critical ResiduesP2; P6
Motif PTM(s)Phosphorylation at Ser-P2 & Thr-P6
Secondary StructureUnknown
Experimental Method(s)Radiolabel; Ubiquitinase assay; Protein kinase assay; Co-IP; Mutation analysis; Pull down
Interaction ID20846
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)15337770, 14532120
CommentsUbiquitination, endocytosis, and lysosomal degradation of the IFNAR1 (interferon alpha receptor 1) subunit of the type I interferon (IFN) receptor is mediated by the SCF ubiquitin ligase complex through a phosphorylation-dependent interaction with F-box and WD repeats protein beta-TrCP2 (FBXW11)

Record No : 39

Instance ID11175
Regular Expression[EN][FYLW][NSQ]xEE[ILMVF][^P][LIVMFA]
Motif InstanceEFSLEEVLA
Bait Uniprot AccessionP47074
Bait Uniprot IdentifierMAD3_YEAST
Bait Gene NameMAD3
Bait OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Sequence Position378-386
Critical ResiduesP1; P5
Motif PTM(s)Unknown
Secondary StructureAlpha helix
Experimental Method(s)X-ray crystallography; Pull down; Co-IP; Y2H; Mutation analysis
Interaction ID21175
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)17227844
CommentsThe Gle2-binding-sequence (GLEBS) motif found in yeast Spindle assembly checkpoint component MAD3 protein binds to the WD40 domain of yeast Cell cycle arrest protein BUB3

Record No : 40

Instance ID11176
Regular Expression[EN][FYLW][NSQ]xEE[ILMVF][^P][LIVMFA]
Motif InstanceEFNTEEILA
Bait Uniprot AccessionP41695
Bait Uniprot IdentifierBUB1_YEAST
Bait Gene NameBUB1
Bait OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Sequence Position333-341
Critical ResiduesP1; P5
Motif PTM(s)Unknown
Secondary StructureAlpha helix
Experimental Method(s)ITC; X-ray crystallography
Interaction ID21176
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)17227844
CommentsThe Gle2-binding-sequence (GLEBS) motif found in yeast Checkpoint serine/threonine-protein kinase BUB1 binds to the WD40 domain of yeast Cell cycle arrest protein BUB3

Record No : 41

Instance ID11177
Regular Expression[EN][FYLW][NSQ]xEE[ILMVF][^P][LIVMFA]
Motif InstanceEFSFEELRA
Bait Uniprot AccessionO43683
Bait Uniprot IdentifierBUB1_HUMAN
Bait Gene NameBUB1
Bait OrganismHomo sapiens (Human)
Sequence Position248-256
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Pull down
Interaction ID21177
Interacting DomainWD40 repeat domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)11352911
CommentsThe Gle2-binding-sequence (GLEBS) motif found in human Mitotic checkpoint serine/threonine-protein kinase BUB1 binds to the WD40 domain of human Mitotic checkpoint protein BUB3

Record No : 42

Instance ID11178
Regular Expression[EN][FYLW][NSQ]xEE[ILMVF][^P][LIVMFA]
Motif InstanceNFSFEELRF
Bait Uniprot AccessionQ02630
Bait Uniprot IdentifierNU116_YEAST
Bait Gene NameNUP116
Bait OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Sequence Position150-158
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Co-IP
Interaction ID21178
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)9463388
CommentsThe Gle2-binding-sequence (GLEBS) motif found within yeast Nucleoporin Nup116p is sufficient and necessary to anchor yeast Nucleoporin Gle2p at the nuclear pores

Record No : 43

Instance ID11987
Regular ExpressionTPxx[SE]
Motif InstanceTPSPE
Bait Uniprot AccessionQ01705
Bait Uniprot IdentifierNOTC1_MOUSE
Bait Gene NameNotch1
Bait OrganismMus musculus (Mouse)
Sequence Position2487-2491
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Sequence based prediction
Interaction ID21987
Interacting DomainWD40 repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)11461910
CommentsThe mouse Neurogenic locus notch homolog protein 1 (Notch1) intracellular domain is ubiquitinated and negatively regulated by the mouse F-box/WD repeat-containing protein 7 (Fbxw7) through a phosphodegron motif recognized by WD40 beta propeller




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For queries, suggestions and submission of novel motifs please contact Dr. Sudipto Saha (ssaha4@jcbose.ac.in)