Total : 12 Records


Record No : 1

Instance ID10441
Regular Expression([FYWL]PxPP)|([FYWL]PP[ALIVTFY]P)
Motif InstanceLPLPP
Bait Uniprot AccessionQ702N8
Bait Uniprot IdentifierXIRP1_HUMAN
Bait Gene NameXIRP1
Sequence Position22-26
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Dot blot; Y2H
Interaction ID20441
Interacting DomainWH1 domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)16631741
CommentsProline-rich motif present in human Xin, the protein encoded by the human gene ‘cardiomyopathy associated 1’ (CMYA1), that is required for its interaction with VASP

Record No : 2

Instance ID10442
Regular Expression([FYWL]PxPP)|([FYWL]PP[ALIVTFY]P)
Motif InstanceLPLPP
Bait Uniprot AccessionQ702N8
Bait Uniprot IdentifierXIRP1_HUMAN
Bait Gene NameXIRP1
Sequence Position22-26
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Y2H
Interaction ID20442
Interacting DomainWH1 domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)16631741
CommentsProline-rich motif present in human Xin, the protein encoded by the human gene ‘cardiomyopathy associated 1’ (CMYA1), that is required for its interaction with ENAH

Record No : 3

Instance ID10443
Regular Expression([FYWL]PxPP)|([FYWL]PP[ALIVTFY]P)
Motif InstanceLPLPP
Bait Uniprot AccessionQ702N8
Bait Uniprot IdentifierXIRP1_HUMAN
Bait Gene NameXIRP1
Sequence Position22-26
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Y2H
Interaction ID20443
Interacting DomainWH1 domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)16631741
CommentsProline-rich motif present in human Xin, the protein encoded by the human gene ‘cardiomyopathy associated 1’ (CMYA1), that is required for its interaction with EVL

Record No : 4

Instance ID10469
Regular ExpressionP[MVLIRWY]V[MVLIAS][LM]
Motif InstancePLVLL
Bait Uniprot AccessionP12956
Bait Uniprot IdentifierXRCC6_HUMAN
Bait Gene NameXRCC6
Sequence Position352-356
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Y2H; Co-IP; Pull down(GST tag)
Interaction ID20469
Interacting DomainChromo shadow domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)11112778
CommentsHuman Ku70 (DNA repair protein XRCC6) interacts with heterochromatin protein 1alpha (HP1 alpha/CBX5) using a HP1-binding motif that interacts with an interface formed by dimerization of two chromoshadow domains in HP1

Record No : 5

Instance ID10691
Regular Expression[DEN][DEN]x{2,3}[ILMVA][DEN][DEN]L
Motif InstanceEEGGDVDDL
Bait Uniprot AccessionP13010
Bait Uniprot IdentifierXRCC5_HUMAN
Bait Gene NameXRCC5
Sequence Position720-728
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Pull down; Co-IP
Interaction ID20691
Interacting DomainHEAT repeat domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)15758953
CommentsConserved carboxy-terminal motif in human DNA repair protein XRCC5 (Ku80) that is required for its interaction with human DNA-dependent protein kinase catalytic subunit (PRKDC)

Record No : 6

Instance ID11102
Regular Expressionxxx([ST])Px
Motif InstanceSSPSPS
Bait Uniprot AccessionP69713
Bait Uniprot IdentifierX_HBVA3
Bait Gene NameX
Sequence Position38-43
Critical ResiduesP4
Motif PTM(s)Phosphorylation at Ser-P4
Secondary StructureUnknown
Experimental Method(s)Alanine scanning; Co-IP; Pull down(GST tag)
Interaction ID21102
Interacting DomainWW domain
Disease Association(s)Cancer
Inhibitor(s)Unknown
Reference(s)17383430
CommentsThe human Peptidyl-prolyl cis-trans isomerase PIN1 interacts with the Ser-41-Pro motif of hepatitis B virus X-protein to enhance hepatocarcinogenesis

Record No : 7

Instance ID11169
Regular Expressionxx(T)xx[DE]x
Motif InstanceESTDEES
Bait Uniprot AccessionQ13426
Bait Uniprot IdentifierXRCC4_HUMAN
Bait Gene NameXRCC4
Sequence Position231-237
Critical ResiduesP3
Motif PTM(s)Phosphorylation at Thr-P3
Secondary StructureUnknown
Experimental Method(s)Mutation analysis; Pull down(GST tag); ITC; Fluorescence polarization spectroscopy
Interaction ID21169
Interacting DomainFHA domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)15385968
CommentsHuman Bifunctional polynucleotide phosphatase/kinase PNKP functions in Nonhomologous end joining (NHEJ) via an FHA domain-dependent interaction with a phosphothreonine motif of human DNA repair protein XRCC4

Record No : 8

Instance ID11171
Regular Expressionxx(T)xx[DE]x
Motif InstanceGSTDEES
Bait Uniprot AccessionQ924T3
Bait Uniprot IdentifierXRCC4_MOUSE
Bait Gene NameXrcc4
Sequence Position229-235
Critical ResiduesP3
Motif PTM(s)Phosphorylation at Thr-P3
Secondary StructureUnknown
Experimental Method(s)X-ray crystallography
Interaction ID21171
Interacting DomainFHA domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)15749016
CommentsMouse Bifunctional polynucleotide phosphatase/kinase Pnkp is recruited to repair complexes through interactions between its N-terminal FHA domain and a phosphorylated threonine residue (T231) in mouse DNA repair protein Xrcc4

Record No : 9

Instance ID11174
Regular Expressionxx(T)xx[DE]x
Motif InstanceENTDSEE
Bait Uniprot AccessionP18887
Bait Uniprot IdentifierXRCC1_HUMAN
Bait Gene NameXRCC1
Sequence Position521-527
Critical ResiduesP3
Motif PTM(s)Phosphorylation at Thr-P3
Secondary StructureUnknown
Experimental Method(s)Fluorescence polarization spectroscopy; Mutation analysis
Interaction ID21174
Interacting DomainFHA domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)15367657
CommentsThe FHA domain of human Bifunctional polynucleotide phosphatase/kinase PNKP binds to a phosphothreonine motif (T523) from human DNA repair protein XRCC1

Record No : 10

Instance ID11232
Regular Expression[ST]x[VL]D
Motif InstanceSSLD
Bait Uniprot AccessionQ13426
Bait Uniprot IdentifierXRCC4_HUMAN
Bait Gene NameXRCC4
Sequence Position259-262
Critical ResiduesP3; P4
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Sequence based prediction
Interaction ID21232
Interacting DomainPDZ domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)22876914
CommentsNovel internal motif identified in human DNA repair protein XRCC4 that is recognized by human Glutaminase-interacting protein (GIP), also known as Tax-interacting protein 1 (TIP1) or Tax1-binding protein 3 (TAX1BP3), composed almost exclusively of a single PDZ domain

Record No : 11

Instance ID12035
Regular ExpressionWxxLxxxL
Motif InstanceWKLLAKGL
Bait Uniprot AccessionQ01831
Bait Uniprot IdentifierXPC_HUMAN
Bait Gene NameXPC
Sequence Position848-855
Critical ResiduesP1; P4
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)X-ray crystallography
Interaction ID22035
Interacting DomainUnknown
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)16627479, 17897675
CommentsThe WxxLxxxL centrin-binding motif in human Xeroderma pigmentosum group C-complementing protein (XPC) that binds to Human Centrin-2 (CETN2)

Record No : 12

Instance ID12145
Regular Expressionxxx[PV]xxP
Motif InstanceGLPPPPP
Bait Uniprot AccessionO70373
Bait Uniprot IdentifierXIRP1_MOUSE
Bait Gene NameXirp1
Sequence Position32-38
Critical ResiduesUnknown
Motif PTM(s)Unknown
Secondary StructureUnknown
Experimental Method(s)Western blot; Pull down(GST tag)
Interaction ID22145
Interacting DomainSH3 domain
Disease Association(s)Unknown
Inhibitor(s)Unknown
Reference(s)23296090
CommentsThe predicted SH3-binding motif in the N-terminal region of mouse Xin actin-binding repeat-containing protein 1 (Xirp1) that interacts with mouse cortactin



© 2014 Bose Institute, Kolkata. All rights reserved

For queries, suggestions and submission of novel motifs please contact Dr. Sudipto Saha (ssaha4@jcbose.ac.in)