MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJNA1176675

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1176675

AttributeValue
SRA Study IDSRP540455
Disease(s)COVID-19 → COVID-19 Asymptomatic Recovery Phase
COVID-19 → COVID-19 Asymptomatic Early Phase
COVID-19 → COVID-19 Severe
COVID-19 → COVID-19 Mild
Control → COVID-19 SARS-CoV-2 Negative
Isolation SourceNasopharyngeal Swab
BiomeUpper Respiratory Tract
Assay TypeAmplicon-16S
InstrumentIon Torrent S5
Library LayoutSINGLE
Year2024
Total Runs81
Processed Runs81
Variable Region
PMID
CountryGreece

Analyses

Taxonomic profile
Discriminant analysis
Multivariate association analysis
Microbial co-occurence analysis

Download

Biom file

Summary of runs

Total number of runs found in the database for this BioProject ID = 81

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