MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJNA311065

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA311065

AttributeValue
SRA Study IDSRP072013
Disease(s)Cystic Fibrosis → Cystic Fibrosis
Isolation SourceBALF; Oropharyngeal Swab
Body siteLower Respiratory Tract; Upper Respiratory Tract
Assay TypeAmplicon-16S
Instrument454 GS FLX Titanium
Library LayoutSINGLE
Year2017
Processed Runs137
Variable RegionV1-V3
PMID28708417
CountryAustralia; USA

Analyses

Taxonomic profile
Discriminant analysis
Multivariate association analysis
Microbial co-occurrence analysis
N.B.- Discriminant analysis cannot be performed because there is only one subgroup in this BioProject

Download

Biom file

Summary of runs

Total number of processed runs found in the database for this BioProject ID = 137

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