MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJNA543785

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA543785

AttributeValue
SRA Study IDSRP198964
Disease(s)Chronic Obstructive Pulmonary Disease (COPD) → COPD Frequent Exacerberator
Chronic Obstructive Pulmonary Disease (COPD) → COPD Infrequent Exacerberator
Isolation SourceSputum; Nasal Wash; Oral Wash
BiomeLower Respiratory Tract; Nasal; Oral
Assay TypeAmplicon-16S
InstrumentIllumina MiSeq
Library LayoutPAIRED
Year2019
Total Runs75
Processed Runs70
Variable RegionV4
PMID3117458
CountryUSA

Analyses

Taxonomic profile
Discriminant analysis
Microbial co-occurence analysis

Download

Biom file

Summary of runs

Total number of runs found in the database for this BioProject ID = 70

Go to Page:         

    
Go to Page:         

    


© 2023 Bose Institute. All rights reserved. For queries, please contact Dr. Sudipto Saha (ssaha4@jcbose.ac.in, ssaha4@gmail.com).