MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJNA590225

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA590225

AttributeValue
SRA Study IDSRP230357
Disease(s)Bronchiectasis → Bronchiectasis
Control → Control
Isolation SourceSputum
BiomeLower Respiratory Tract
Assay TypeAmplicon-16S; Amplicon-ITS; WMS
InstrumentIllumina MiSeq; Illumina HiSeq 2500
Library LayoutPAIRED
Year2020
Total Runs691
Processed Runs677
Variable RegionV3-V4; ITS2
PMID33820995
CountrySingapore; UK; Malaysia; Italy

Analyses

Taxonomic profile
Discriminant analysis
Microbial co-occurence analysis

Download

Biom file

Summary of runs

Total number of runs found in the database for this BioProject ID = 677

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