MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJNA639286

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA639286

AttributeValue
SRA Study IDSRP273583
Disease(s)COVID-19 → COVID-19
Healthy → Healthy
Isolation SourceThroat Swab; Anal Swab
Body siteUpper Respiratory Tract; Anus
Assay TypeAmplicon-16S
InstrumentIllumina MiSeq
Library LayoutPAIRED
Year2020
Processed Runs181
Variable RegionV4
PMID33603076
CountryChina

Analyses

Taxonomic profile
Discriminant analysis
Microbial co-occurrence analysis
N.B.- Discriminant analysis can not be performed for Anal Swab (Amplicon-16S) because there is only one subgroup for this isolation source in this BioProject.

Download

Biom file

Summary of runs

Total number of processed runs found in the database for this BioProject ID = 181

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