BioProject ID: PRJNA683617

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA683617

Attribute	Value
SRA Study ID	SRP297099
Disease(s)	COVID-19 → COVID-19 Control → Non COVID-19 Healthy → Healthy
Isolation Source	OropharyngealSwab; Endotracheal Aspirate; Nasopharyngeal Swab
Biome	Lower Respiratory Tract; Upper Respiratory Tract; Nasal
Assay Type	Amplicon-16S
Instrument	Illumina HiSeq 2500
Library Layout	PAIRED
Year	2020
Total Runs	703
Processed Runs	586
Variable Region	V1-V2
PMID	34399607
Country	USA

Analyses

Taxonomic profile	OropharyngealSwab - Amplicon-16SEndotracheal Aspirate - Amplicon-16SNasopharyngeal Swab - Amplicon-16S
Discriminant analysis	OropharyngealSwab - Amplicon-16SEndotracheal Aspirate - Amplicon-16SNasopharyngeal Swab - Amplicon-16S
Microbial co-occurence analysis	OropharyngealSwab - Amplicon-16SEndotracheal Aspirate - Amplicon-16SNasopharyngeal Swab - Amplicon-16S

Download

Biom file	Download - Amplicon-16S

Summary of runs

Total number of runs found in the database for this BioProject ID = 586

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