MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJNA683885

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA683885

AttributeValue
SRA Study IDSRP297410
Disease(s)Chronic Obstructive Pulmonary Disease (COPD) → COPD Stable
Chronic Obstructive Pulmonary Disease (COPD) → COPD Exacerbation
Isolation SourceSputum
BiomeLower Respiratory Tract
Assay TypeAmplicon-16S
InstrumentIllumina MiSeq
Library LayoutPAIRED
Year2022
Total Runs30
Processed Runs30
Variable RegionV1-V3
PMID34611216
CountrySouth Africa

Analyses

Taxonomic profile
Discriminant analysis
Microbial co-occurence analysis

Download

Biom file

Summary of runs

Total number of runs found in the database for this BioProject ID = 30

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