MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJNA704967

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA704967

AttributeValue
SRA Study IDSRP308362
Disease(s)COVID-19 → COVID-19 SARS-CoV-2 Positive
Control → COVID-19 SARS-CoV-2 Negative
Isolation SourceNasopharyngeal Swab
BiomeUpper Respiratory Tract
Assay TypeAmplicon-16S
InstrumentIllumina MiSeq
Library LayoutPAIRED
Year2021
Total Runs24
Processed Runs19
Variable RegionV1-V3
PMID34058978
CountryUSA

Analyses

Taxonomic profile
Discriminant analysis
Microbial co-occurence analysis

Download

Biom file

Summary of runs

Total number of runs found in the database for this BioProject ID = 19

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