Databases
LncRTPred is a Machine Learning based Target Prediction Tool which Predicts the interaction between Long non-coding RNA(lncRNA) and Coding RNA or Messenger RNA (mRNA).
TbAMLPred performs Machine Learning based Preliminary Detection of Acute Myeloid Leukemia governed by MicroRNA mediated Gene Regulatory Circuits.
piRNAQuest V.2 is an updated database for multi-species piRNA (ranges from nematode to chordate) survey, search and retrieval with an emphasis on piRNA biogenesis, piRNA target interaction and disease associations.
LncRBase V.2 is an updated resource for multispecies lncRNAs (Human, Mouse, Fly, Zebrafish, Cow, Chicken, Rat, C.elegans) and ClinicLSNP hosting genetic variants in lncRNAs for cancer patients (Breast, Ovarian and Cervical).
LncRBase is a comprehensive database for long noncoding RNA (lncRNA) in Human and Mouse. The database hosts information on basic lncRNA transcript features, with additional details on genomic location, overlapping small noncoding RNAs, associated Repeat Elements, associated imprinted genes, and lncRNA promoter information.
piRNAQuest is an integrated resource for searching the piRNAome of human, mouse and rat. This unique, comprehensive and unified database provides annotation of piRNAs based on their genomic location in Gene, Intron, Intergenic, CDS, UTR, Repeat elements, Pseudogenes and Syntenic regions.
Tools
PVT is an efficient spliced alignment tool for RNA-Seq reads. It is capable of aligning both single-end and paired-end RNA-Seq reads to mammalian-sized genomes and finding out both annotated and novel splice junctions.
miRTPred is target prediction tool based on a blended learning model. The predictor model is trained using experimentally validated miRNA-mRNA target interactions from CLIP and CLASH experiments. The optimal model is built using an ensemble learning model.
Copyright
1. LncRBase (Diary No. 50939/2014-CO/L)
2. piRNAQuest (Diary No. 50940/2014-CO/L)
